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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
Hi-C
3
GRO-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
173
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
chromatin remodeller
Date released
66
August, 2017
53
May, 2021
35
August, 2021
29
December, 2017
16
February, 2023
15
February, 2018
6
October, 2019
5
November, 2019
4
February, 2021
3
January, 2018
2
March, 2020
1
August, 2018
Available data
260
bam
235
bigWig
tsv
115
bed narrowPeak
111
fastq
40
tagAlign
22
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
235
Homo sapiens
Biosample type
1699
tissue
817
primary cell
513
cell line
235
in vitro differentiated cells
6
stem cell
Organ
90
connective tissue
embryo
21
epithelium
14
liver
3
pancreas
1
adipose tissue
Project
235
AMP
Genome assembly (visualization)
150
hg19
120
GRCh38
3
hg18
Lab
181
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
19
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
ibed
tsv
organ_slims!
embryo
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
235 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
GRO-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
65
8
1
1
1
embryonic stem cell
40
6
5
neural progenitor cell
21
10
hepatocyte
14
definitive endodermal cell
8
1
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