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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
136
DNA binding
132
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
74
histone
74
histone modification
42
transcription factor
38
broad histone mark
35
narrow histone mark
20
control
11
RNA binding protein
3
chromatin remodeller
Date released
124
May, 2021
54
August, 2017
30
December, 2017
26
February, 2018
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
263
bam
238
bigWig
125
tsv
118
bed narrowPeak
114
fastq
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
325
Homo sapiens
Biosample type
2381
tissue
979
primary cell
331
cell line
325
in vitro differentiated cells
10
stem cell
Organ
83
connective tissue
embryo
21
epithelium
15
liver
1
adipose tissue
1
heart
Project
325
AMP
Genome assembly (visualization)
259
hg19
226
GRCh38
3
hg18
Lab
271
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
files.file_type!
tagAlign
lab.title!
Katalin Susztak, Upenn
month_released!
November, 2017
organ_slims!
embryo
BIOSAMPLE
ASSAY
325 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
5
8
1
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
1
7
10
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