Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
113
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
113
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
114
May, 2021
39
February, 2018
32
August, 2017
32
December, 2017
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
108
fastq
100
bed narrowPeak
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
309
Homo sapiens
Biosample type
2445
tissue
971
primary cell
309
in vitro differentiated cells
286
cell line
10
stem cell
Organ
61
connective tissue
26
embryo
19
epithelium
13
liver
1
adipose tissue
1
heart
Project
309
AMP
Genome assembly (visualization)
247
hg19
214
GRCh38
4
hg18
Lab
267
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
files.file_type!
tagAlign
month_released!
August, 2020
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
309 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
31
8
1
1
embryonic stem cell
7
28
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
15
1
+ See 30 more…
See all biosamples
Download