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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
131
total RNA-seq
32
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
158
DNA binding
133
Transcription
33
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
36
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
82
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
38
August, 2021
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
288
bam
247
bigWig
141
fastq
131
tsv
126
bed narrowPeak
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
337
Homo sapiens
Biosample type
1981
tissue
526
cell line
337
in vitro differentiated cells
329
primary cell
8
stem cell
Organ
93
connective tissue
29
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
337
AMP
Genome assembly (visualization)
283
hg19
263
GRCh38
4
hg18
Lab
337
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
tar
month_released!
May, 2022
organ_slims!
pancreas
BIOSAMPLE
ASSAY
337 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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