Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
38
ATAC-seq
9
total RNA-seq
4
Hi-C
3
GRO-seq
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
176
DNA binding
39
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
53
May, 2021
35
August, 2021
30
December, 2017
16
February, 2023
15
February, 2018
6
October, 2019
5
November, 2019
February, 2021
4
March, 2020
3
January, 2018
1
August, 2018
Available data
241
bam
216
bigWig
118
bed narrowPeak
114
fastq
tsv
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
236
Homo sapiens
Biosample type
1608
tissue
777
primary cell
525
cell line
236
in vitro differentiated cells
6
stem cell
Organ
88
connective tissue
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
236
AMP
Genome assembly (visualization)
151
hg19
123
GRCh38
3
hg18
Lab
182
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
21
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
files.file_type!
tsv
month_released!
February, 2021
organ_slims!
embryo
BIOSAMPLE
ASSAY
236 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
GRO-seq
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
4
1
1
1
embryonic stem cell
40
6
5
neural progenitor cell
21
10
hepatocyte
15
definitive endodermal cell
8
1
+ See 17 more…
See all biosamples
Download