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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 198ChIP-seq
  • 42ATAC-seq
  • 9total RNA-seq
  • 4GRO-seq
  • 4Hi-C
  • 3pCHi-C
  • 2Capture-C
  • 1DNase-seq
Assay category
  • 198DNA binding
  • 43DNA accessibility
  • 9Transcription
  • 43D chromatin structure
Target of assay
  • 112histone
  • 112histone modification
  • 56broad histone mark
  • 55narrow histone mark
  • 49transcription factor
  • 37control
  • 11RNA binding protein
  • 3chromatin remodeller
Date released
  • 68August, 2017
  • 53May, 2021
  • 43December, 2017
  • 35August, 2021
  • 24February, 2018
  • 16February, 2023
  • 6October, 2019
  • 5November, 2019
  • 4February, 2021
  • 4January, 2018
  • 4March, 2020
  • 1August, 2018
Available data
  • 291bam
  • 259bigWig
  • 141fastq
  • 132bed narrowPeak
  • tsv
  • 40tagAlign
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 263Homo sapiens
Biosample type
  • 1701tissue
  • 818primary cell
  • 543cell line
  • 263in vitro differentiated cells
  • 6stem cell
Organ
  • 92connective tissue
  • 23embryo
  • 22epithelium
  • 15liver
  • 3pancreas
  • 1adipose tissue
Project
  • 263AMP
Genome assembly (visualization)
  • 170hg19
  • 138GRCh38
  • 4hg18
Lab
  • 209AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 25inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 17inconsistent control read length
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

263 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte678111
embryonic stem cell4065
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
primitive gut cell81
Posterior foregut51
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
Hepatic endoderm4
cardiomyocytes (cardiac muscle cell)121
immature adipocyte22
cardiomyocytes3
endocrine cell3
pancreatic PP cell3
posterior foregut3
cardiac precursors (cardiac muscle cell)11
lymphocyte of B lineage (iPSC)11
osteoblast11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
neuron cell of Hypothalamus (neuron)1
white fat cell1
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