Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 198ChIP-seq
  • 42ATAC-seq
  • 9total RNA-seq
  • 4GRO-seq
  • 4Hi-C
  • 3pCHi-C
  • 2Capture-C
  • 1DNase-seq
Assay category
  • 198DNA binding
  • 43DNA accessibility
  • 9Transcription
  • 43D chromatin structure
Target of assay
  • 112histone
  • 112histone modification
  • 56broad histone mark
  • 55narrow histone mark
  • 49transcription factor
  • 37control
  • 11RNA binding protein
  • 3chromatin remodeller
Date released
  • 68August, 2017
  • 53May, 2021
  • 43December, 2017
  • 35August, 2021
  • 24February, 2018
  • 16February, 2023
  • 6October, 2019
  • 5November, 2019
  • 4February, 2021
  • 4January, 2018
  • 4March, 2020
  • 1August, 2018
Available data
  • 291bam
  • 259bigWig
  • 141fastq
  • 132bed narrowPeak
  • tsv
  • 40tagAlign
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 263Homo sapiens
Biosample type
  • 1701tissue
  • 818primary cell
  • 543cell line
  • 263in vitro differentiated cells
  • 6stem cell
Organ
  • 92connective tissue
  • 23embryo
  • 22epithelium
  • 15liver
  • 3pancreas
  • 1adipose tissue
Project
  • 263AMP
Genome assembly (visualization)
  • 170hg19
  • 138GRCh38
  • 4hg18
Lab
  • 209AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 25inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 17inconsistent control read length
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

263 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte678111
embryonic stem cell4065
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego