Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
134
total RNA-seq
39
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
1
DNase-seq
1
pCHi-C
Assay category
198
DNA binding
134
Transcription
40
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
13
February, 2023
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
December, 2019
1
August, 2018
Available data
289
bam
257
bigWig
141
fastq
132
bed narrowPeak
125
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
txt
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
381
Homo sapiens
Biosample type
2500
tissue
1051
primary cell
650
cell line
381
in vitro differentiated cells
6
stem cell
Organ
97
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
381
AMP
Genome assembly (visualization)
288
hg19
263
GRCh38
4
hg18
Lab
330
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
txt
month_released!
December, 2019
July, 2019
March, 2020
BIOSAMPLE
ASSAY
381 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
Hi-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 28 more…
See all biosamples
Download