Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
17
ATAC-seq
11
total RNA-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
89
DNA binding
18
DNA accessibility
11
Transcription
Target of assay
52
histone
52
histone modification
27
broad histone mark
25
transcription factor
24
narrow histone mark
12
control
6
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
19
December, 2017
13
February, 2023
8
February, 2021
6
May, 2021
4
August, 2021
2
October, 2019
1
August, 2018
Available data
83
bam
77
bigWig
74
fastq
63
bed narrowPeak
17
bigBed narrowPeak
17
tagAlign
13
bed bed3+
7
tsv
5
bed bed3
4
bed bedgraph
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
121
Homo sapiens
Biosample type
562
tissue
445
primary cell
121
in vitro differentiated cells
79
cell line
1
stem cell
Organ
97
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
121
AMP
Genome assembly (visualization)
93
hg19
74
GRCh38
Lab
117
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
7
inconsistent control read length
files.file_type!
vcf
BIOSAMPLE
ASSAY
121 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
8
5
1
1
hepatocyte
15
chondrocyte
5
Hepatic endoderm
4
immature adipocyte
2
2
+ See 7 more…
See all biosamples
Download