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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
114
total RNA-seq
38
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
116
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
August, 2018
Available data
269
bam
237
bigWig
140
fastq
132
bed narrowPeak
109
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
6
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
367
Homo sapiens
Biosample type
2167
tissue
1037
primary cell
566
cell line
367
in vitro differentiated cells
10
stem cell
Organ
88
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
367
AMP
Genome assembly (visualization)
271
hg19
243
GRCh38
4
hg18
Lab
313
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
97
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
xls
lab.title!
Maike Sander, UCSD
month_released!
August, 2018
February, 2021
BIOSAMPLE
ASSAY
367 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
1
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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