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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
26
ChIP-seq
17
ATAC-seq
Assay category
112
Transcription
26
DNA binding
17
DNA accessibility
Target of assay
14
histone
14
histone modification
8
control
8
narrow histone mark
6
broad histone mark
4
transcription factor
Date released
85
May, 2021
37
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
291
bam
259
bigWig
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
155
Homo sapiens
Biosample type
1537
tissue
372
primary cell
157
cell line
155
in vitro differentiated cells
Organ
5
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
155
AMP
Genome assembly (visualization)
147
GRCh38
146
hg19
Lab
155
AMP-T2D consortium
Audit category:
97
inconsistent ontology term
files.file_type!
fastq
vcf
BIOSAMPLE
ASSAY
155 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
20
10
cardiac precursors (cardiac muscle cell)
19
1
induced pluripotent stem cell
9
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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