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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
127
total RNA-seq
29
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
143
DNA binding
127
Transcription
30
DNA accessibility
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
chromatin remodeller
Date released
90
May, 2021
52
August, 2017
42
December, 2017
39
August, 2021
39
February, 2018
22
February, 2021
6
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
March, 2020
Available data
288
bam
256
bigWig
138
fastq
131
tsv
129
bed narrowPeak
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
304
Homo sapiens
Biosample type
1993
tissue
585
primary cell
570
cell line
304
in vitro differentiated cells
4
stem cell
Organ
61
connective tissue
29
embryo
23
epithelium
14
liver
3
pancreas
1
heart
Project
304
AMP
Genome assembly (visualization)
273
hg19
262
GRCh38
4
hg18
Lab
294
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
month_released!
September, 2018
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
304 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
51
4
3
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
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