Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
65
ChIP-seq
17
ATAC-seq
4
Hi-C
Assay category
127
Transcription
65
DNA binding
17
DNA accessibility
4
3D chromatin structure
Target of assay
67
histone
histone modification
36
narrow histone mark
35
transcription factor
30
broad histone mark
30
control
4
RNA binding protein
2
chromatin remodeller
Date released
84
May, 2021
28
August, 2017
24
August, 2021
23
February, 2018
22
February, 2021
17
December, 2017
6
October, 2019
5
November, 2019
4
March, 2020
Available data
212
bam
181
bigWig
131
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
213
Homo sapiens
Biosample type
1204
tissue
350
primary cell
214
cell line
213
in vitro differentiated cells
1
stem cell
Organ
33
connective tissue
16
embryo
7
epithelium
2
pancreas
1
heart
1
liver
Project
213
AMP
Genome assembly (visualization)
188
hg19
184
GRCh38
Lab
213
AMP-T2D consortium
Audit category:
103
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
bigBed narrowPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
213 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
28
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
8
+ See 24 more…
See all biosamples
Download