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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
103
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
103
DNA binding
18
DNA accessibility
Target of assay
55
histone
55
histone modification
28
narrow histone mark
26
broad histone mark
26
transcription factor
22
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
54
August, 2017
December, 2017
39
February, 2018
37
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
248
bam
225
bigWig
131
tsv
98
bed narrowPeak
98
fastq
40
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
248
Homo sapiens
Biosample type
1859
tissue
609
primary cell
582
cell line
248
in vitro differentiated cells
Organ
59
connective tissue
15
embryo
5
epithelium
3
pancreas
1
heart
Project
248
AMP
Genome assembly (visualization)
227
GRCh38
226
hg19
Lab
248
AMP-T2D consortium
Audit category:
97
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
month_released!
December, 2017
organ_slims!
large intestine
BIOSAMPLE
ASSAY
248 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
53
1
neural progenitor cell
7
20
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
9
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