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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
103
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
124
DNA binding
103
Transcription
18
DNA accessibility
Target of assay
64
histone
64
histone modification
34
transcription factor
33
narrow histone mark
30
broad histone mark
26
control
4
RNA binding protein
2
chromatin remodeller
Date released
80
May, 2021
54
August, 2017
39
February, 2018
37
August, 2021
24
December, 2017
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
245
bam
217
bigWig
122
fastq
114
bed narrowPeak
107
tsv
37
tagAlign
25
bed bed3+
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
245
Homo sapiens
Biosample type
1455
tissue
462
cell line
364
primary cell
245
in vitro differentiated cells
3
stem cell
Organ
55
connective tissue
28
embryo
epithelium
15
liver
3
pancreas
1
heart
Project
245
AMP
Genome assembly (visualization)
223
GRCh38
222
hg19
Lab
245
AMP-T2D consortium
Audit category:
78
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
month_released!
February, 2021
September, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
245 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
definitive endodermal cell
8
2
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