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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
105
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
105
DNA binding
18
DNA accessibility
Target of assay
79
histone
79
histone modification
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
42
August, 2017
31
February, 2018
30
August, 2021
30
December, 2017
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
250
bam
219
bigWig
131
tsv
108
fastq
92
bed narrowPeak
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
250
Homo sapiens
Biosample type
1646
tissue
565
cell line
506
primary cell
250
in vitro differentiated cells
2
stem cell
Organ
47
connective tissue
20
embryo
16
epithelium
10
liver
2
pancreas
1
heart
Project
250
AMP
Genome assembly (visualization)
225
GRCh38
224
hg19
Lab
250
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
organ_slims!
ureter
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
250 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
41
1
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
12
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