Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
6
ATAC-seq
2
Capture-C
Assay category
33
DNA binding
6
DNA accessibility
Target of assay
20
histone
20
histone modification
11
broad histone mark
9
narrow histone mark
8
transcription factor
5
control
2
RNA binding protein
1
chromatin remodeller
Date released
26
December, 2017
7
August, 2017
4
February, 2023
2
August, 2021
2
October, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
bigBed broadPeak
Organism
41
Homo sapiens
Biosample type
325
tissue
304
cell line
69
primary cell
41
in vitro differentiated cells
3
stem cell
Organ
15
connective tissue
14
epithelium
14
liver
3
embryo
Project
41
AMP
Genome assembly (visualization)
41
hg19
33
GRCh38
Lab
39
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
8
inconsistent control read length
files.file_type!
bigBed broadPeak
organ_slims!
brain
BIOSAMPLE
ASSAY
41 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Capture-C
in vitro differentiated cells
hepatocyte
14
adipocyte
7
3
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
+ See 4 more…
See all biosamples
Download