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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
16
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
Assay category
123
Transcription
16
DNA binding
4
DNA accessibility
Target of assay
6
histone
6
histone modification
6
transcription factor
4
control
3
broad histone mark
3
narrow histone mark
Date released
77
May, 2021
22
February, 2021
11
February, 2018
9
August, 2021
9
December, 2017
7
August, 2017
4
February, 2023
4
March, 2020
2
December, 2019
2
October, 2019
Available data
263
bam
238
bigWig
125
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
bed broadPeak
1
bigBed broadPeak
Organism
147
Homo sapiens
Biosample type
1105
tissue
280
primary cell
147
in vitro differentiated cells
113
cell line
7
stem cell
Organ
18
connective tissue
embryo
2
epithelium
1
heart
Project
147
AMP
Genome assembly (visualization)
143
hg19
137
GRCh38
Lab
145
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
90
inconsistent ontology term
2
audit script error
Audit category:
7
inconsistent control read length
files.file_type!
bed broadPeak
organ_slims!
embryo
BIOSAMPLE
ASSAY
147 results
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total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
adipocyte
4
7
1
1
induced pluripotent stem cell
9
neural progenitor cell
7
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