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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19ChIP-seq
  • 4ATAC-seq
  • 2Capture-C
Assay category
  • 19DNA binding
  • 4DNA accessibility
Target of assay
  • 8histone
  • 8histone modification
  • 6transcription factor
  • 5control
  • 4broad histone mark
  • 4narrow histone mark
Date released
  • 12December, 2017
  • 7August, 2017
  • 4February, 2023
  • 2August, 2021
Available data
  • 291bam
  • 259bigWig
  • 141fastq
  • 132bed narrowPeak
  • 131tsv
  • 40tagAlign
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 25Homo sapiens
Biosample type
  • 205tissue
  • 37primary cell
  • 25in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 13connective tissue
  • 3embryo
Project
  • 25AMP
Genome assembly (visualization)
  • 25hg19
  • 19GRCh38
Lab
  • 23AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 8inconsistent control read length
BIOSAMPLE
ASSAY

25 results

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ChIP-seq
ATAC-seq
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in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
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