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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
5
ATAC-seq
4
Hi-C
2
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
5
DNA accessibility
4
3D chromatin structure
Date released
79
May, 2021
22
February, 2021
15
February, 2018
7
August, 2021
6
March, 2020
5
February, 2023
4
October, 2019
2
December, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
140
Homo sapiens
Biosample type
1092
tissue
277
primary cell
140
in vitro differentiated cells
122
cell line
4
stem cell
Organ
10
connective tissue
6
embryo
2
epithelium
1
heart
Project
140
AMP
Genome assembly (visualization)
136
hg19
127
GRCh38
Lab
140
AMP-T2D consortium
Audit category:
94
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
induced pluripotent stem cell
9
cardiomyocytes (cardiac muscle cell)
3
2
1
2
neural progenitor cell
7
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