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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
129
Transcription
1
DNA accessibility
Date released
79
May, 2021
22
February, 2021
15
February, 2018
7
August, 2021
4
March, 2020
2
December, 2019
2
October, 2019
1
August, 2017
Available data
254
bam
222
bigWig
131
tsv
108
fastq
100
bed narrowPeak
36
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
0
bed bedMethyl
Organism
132
Homo sapiens
Biosample type
1314
tissue
324
primary cell
135
cell line
132
in vitro differentiated cells
4
stem cell
Organ
6
connective tissue
6
embryo
2
epithelium
1
heart
Project
132
AMP
Genome assembly (visualization)
128
GRCh38
128
hg19
Lab
132
AMP-T2D consortium
Audit category:
90
inconsistent ontology term
2
audit script error
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
neural progenitor cell
7
cardiomyocytes (cardiac muscle cell)
3
1
2
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