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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
23
ATAC-seq
1
DNase-seq
Assay category
29
DNA binding
24
DNA accessibility
Target of assay
78
histone
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
chromatin remodeller
Date released
16
August, 2017
12
August, 2021
10
December, 2017
5
November, 2019
4
May, 2021
4
October, 2019
2
February, 2023
Available data
209
bam
178
bigWig
131
tsv
73
fastq
51
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
53
Homo sapiens
Biosample type
463
tissue
339
cell line
78
primary cell
53
in vitro differentiated cells
Organ
20
connective tissue
3
embryo
2
epithelium
1
liver
1
pancreas
Project
53
AMP
Genome assembly (visualization)
53
hg19
47
GRCh38
Lab
49
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
8
inconsistent control read length
target.investigated_as!
chromatin remodeller
histone modification
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
15
3
1
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes
3
pancreatic endoderm
3
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