Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
68
ChIP-seq
19
ATAC-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
124
Transcription
68
DNA binding
19
DNA accessibility
Target of assay
53
histone
53
histone modification
28
narrow histone mark
25
broad histone mark
15
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
83
May, 2021
34
December, 2017
31
February, 2018
30
August, 2021
18
February, 2021
5
November, 2019
4
March, 2020
4
October, 2019
2
December, 2019
2
February, 2023
Available data
232
bam
202
bigWig
126
tsv
87
bed narrowPeak
86
fastq
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
213
Homo sapiens
Biosample type
1590
tissue
533
primary cell
523
cell line
213
in vitro differentiated cells
5
stem cell
Organ
connective tissue
20
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
213
AMP
Genome assembly (visualization)
208
hg19
207
GRCh38
Lab
211
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
2
audit script error
Audit category:
11
inconsistent control read length
lab.title!
Mark McCarthy, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
213 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
12
hepatocyte
14
+ See 23 more…
See all biosamples
Download