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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
21
ATAC-seq
Assay category
63
DNA binding
21
DNA accessibility
Target of assay
52
histone
52
histone modification
27
narrow histone mark
25
broad histone mark
11
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
August, 2017
34
December, 2017
25
August, 2021
16
February, 2018
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
152
bam
122
bigWig
87
fastq
84
bed narrowPeak
52
tsv
20
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
84
Homo sapiens
Biosample type
853
tissue
403
cell line
135
primary cell
84
in vitro differentiated cells
2
stem cell
Organ
16
epithelium
14
embryo
14
liver
2
connective tissue
Project
84
AMP
Genome assembly (visualization)
83
hg19
80
GRCh38
Lab
80
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
11
inconsistent control read length
month_released!
April, 2019
August, 2017
May, 2021
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
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