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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
19
ATAC-seq
Assay category
66
DNA binding
19
DNA accessibility
Target of assay
52
histone
52
histone modification
27
narrow histone mark
25
broad histone mark
14
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
34
December, 2017
23
August, 2021
16
February, 2018
5
November, 2019
3
May, 2021
2
February, 2023
2
October, 2019
Available data
229
bam
200
bigWig
126
tsv
86
fastq
85
bed narrowPeak
23
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
85
Homo sapiens
Biosample type
848
tissue
383
cell line
210
primary cell
85
in vitro differentiated cells
2
stem cell
Organ
connective tissue
18
epithelium
14
embryo
14
liver
pancreas
Project
85
AMP
Genome assembly (visualization)
84
hg19
83
GRCh38
Lab
83
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
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