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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
15
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
1
DNase-seq
Assay category
120
DNA binding
15
Transcription
4
3D chromatin structure
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
54
August, 2017
43
December, 2017
39
February, 2018
4
January, 2018
4
March, 2020
2
October, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
147
Homo sapiens
Biosample type
429
cell line
413
primary cell
370
tissue
147
in vitro differentiated cells
4
stem cell
Organ
55
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
147
AMP
Genome assembly (visualization)
124
hg19
118
GRCh38
4
hg18
Lab
147
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
October, 2017
organ_slims!
thymus
BIOSAMPLE
ASSAY
147 results
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ChIP-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
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