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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
37
ChIP-seq
12
ATAC-seq
4
GRO-seq
Assay category
127
Transcription
37
DNA binding
12
DNA accessibility
Target of assay
78
histone
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
88
May, 2021
22
August, 2017
22
February, 2021
15
February, 2018
11
December, 2017
9
August, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
212
bam
181
bigWig
131
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
bigBed broadPeak
Organism
180
Homo sapiens
Biosample type
1011
tissue
440
cell line
328
primary cell
180
in vitro differentiated cells
1
stem cell
Organ
31
connective tissue
10
embryo
5
epithelium
2
liver
1
heart
1
pancreas
Project
180
AMP
Genome assembly (visualization)
176
hg19
164
GRCh38
4
hg18
Lab
170
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
91
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
bigBed broadPeak
month_released!
July, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
180 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
22
3
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
embryonic stem cell
2
6
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