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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
101
ChIP-seq
10
ATAC-seq
4
GRO-seq
Assay category
127
Transcription
101
DNA binding
10
DNA accessibility
Target of assay
66
histone
66
histone modification
35
narrow histone mark
35
transcription factor
30
broad histone mark
4
RNA binding protein
2
chromatin remodeller
Date released
89
May, 2021
47
August, 2017
31
February, 2018
22
August, 2021
22
February, 2021
20
December, 2017
4
January, 2018
3
February, 2023
2
March, 2020
2
October, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
242
Homo sapiens
Biosample type
1212
tissue
495
primary cell
242
in vitro differentiated cells
167
cell line
3
stem cell
Organ
54
connective tissue
21
embryo
6
epithelium
2
pancreas
1
heart
Project
242
AMP
Genome assembly (visualization)
237
hg19
228
GRCh38
4
hg18
Lab
232
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
August, 2020
organ_slims!
vein
BIOSAMPLE
ASSAY
242 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
47
1
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
12
1
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