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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
96
DNA binding
1
DNA accessibility
Target of assay
49
histone
49
histone modification
33
transcription factor
25
narrow histone mark
23
broad histone mark
14
control
6
RNA binding protein
3
chromatin remodeller
Date released
54
August, 2017
43
December, 2017
February, 2018
4
January, 2018
1
August, 2018
Available data
252
bam
228
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
102
Homo sapiens
Biosample type
427
cell line
409
primary cell
360
tissue
102
in vitro differentiated cells
4
stem cell
Organ
55
connective tissue
19
epithelium
15
liver
14
embryo
1
adipose tissue
Project
102
AMP
Genome assembly (visualization)
87
GRCh38
87
hg19
4
hg18
Lab
102
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
files.file_type!
bed bed3
month_released!
February, 2018
October, 2017
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
hepatocyte
15
pancreatic endoderm
9
1
Posterior foregut
5
1
definitive endodermal cell
5
1
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