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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
Assay category
105
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
53
histone
53
histone modification
31
transcription factor
28
narrow histone mark
24
broad histone mark
21
control
4
RNA binding protein
2
chromatin remodeller
Date released
54
August, 2017
39
February, 2018
28
December, 2017
4
January, 2018
Available data
276
bam
245
bigWig
131
tsv
126
fastq
118
bed narrowPeak
40
tagAlign
25
bed bed3+
7
bed bedgraph
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
125
Homo sapiens
Biosample type
400
primary cell
294
tissue
125
in vitro differentiated cells
60
cell line
4
stem cell
Organ
54
connective tissue
27
embryo
19
epithelium
liver
Project
125
AMP
Genome assembly (visualization)
104
GRCh38
104
hg19
4
hg18
Lab
125
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bedpe bed3+
month_released!
November, 2017
organ_slims!
liver
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
Posterior foregut
5
1
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