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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
15
total RNA-seq
4
GRO-seq
Assay category
67
DNA binding
15
Transcription
Target of assay
40
histone
40
histone modification
21
narrow histone mark
19
broad histone mark
16
control
11
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
43
December, 2017
39
February, 2018
4
January, 2018
Available data
229
bam
200
bigWig
126
tsv
86
fastq
85
bed narrowPeak
23
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
86
Homo sapiens
Biosample type
427
cell line
151
primary cell
121
tissue
86
in vitro differentiated cells
4
stem cell
Organ
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
86
AMP
Genome assembly (visualization)
69
GRCh38
69
hg19
4
hg18
Lab
86
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
Posterior foregut
5
1
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