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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
167
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
43
narrow histone mark
43
transcription factor
36
control
7
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
43
December, 2017
42
August, 2021
39
February, 2018
37
August, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
260
bam
229
bigWig
131
tsv
110
fastq
102
bed narrowPeak
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
363
Homo sapiens
Biosample type
2761
tissue
1080
primary cell
611
cell line
363
in vitro differentiated cells
10
stem cell
Organ
66
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
363
AMP
Genome assembly (visualization)
267
hg19
235
GRCh38
4
hg18
Lab
309
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.platform.term_name!
Illumina Genome Analyzer
BIOSAMPLE
ASSAY
363 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
adipocyte
36
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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