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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
127
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
174
DNA binding
129
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
96
histone
96
histone modification
49
transcription factor
48
broad histone mark
47
narrow histone mark
29
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
6
February, 2018
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
258
bam
234
bigWig
122
tsv
116
bed narrowPeak
108
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
361
Homo sapiens
Biosample type
2767
tissue
1051
primary cell
600
cell line
361
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
24
epithelium
17
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
361
AMP
Genome assembly (visualization)
272
hg19
240
GRCh38
4
hg18
Lab
307
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
files.platform.term_name!
Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY
361 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
37
6
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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