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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 198ChIP-seq
  • 136total RNA-seq
  • 42ATAC-seq
  • 5pCHi-C
  • 4GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 198DNA binding
  • 138Transcription
  • 43DNA accessibility
  • 43D chromatin structure
Target of assay
  • 112histone
  • 112histone modification
  • 56broad histone mark
  • 55narrow histone mark
  • 49transcription factor
  • 37control
  • 11RNA binding protein
  • 3chromatin remodeller
Date released
  • 132May, 2021
  • 68August, 2017
  • 43December, 2017
  • 42August, 2021
  • 39February, 2018
  • 26February, 2021
  • 16February, 2023
  • 8March, 2020
  • 8October, 2019
  • 5November, 2019
  • 4January, 2018
  • 2December, 2019
  • 1August, 2018
Available data
  • 291bam
  • 259bigWig
  • 141fastq
  • 132bed narrowPeak
  • 131tsv
  • 40tagAlign
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 394Homo sapiens
Biosample type
  • 2777tissue
  • 1088primary cell
  • 651cell line
  • 394in vitro differentiated cells
  • 10stem cell
Organ
  • 97connective tissue
  • 29embryo
  • 24epithelium
  • 15liver
  • 3pancreas
  • 1adipose tissue
  • 1heart
Project
  • 394AMP
Genome assembly (visualization)
  • 297hg19
  • 265GRCh38
  • 4hg18
Lab
  • 340AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 115inconsistent ontology term
  • 2audit script error
Audit category:
  • 6missing controlled_by
Audit category:
  • 17inconsistent control read length
files.read_length!
  • 25
BIOSAMPLE
ASSAY

394 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte675811
cardiomyocytes359
embryonic stem cell40761
neural progenitor cell21710
pancreatic endoderm1841
cardiac precursors (cardiac muscle cell)1911
hepatocyte15
definitive endodermal cell821
primitive gut cell821
cardiomyocytes (cardiac muscle cell)31222
induced pluripotent stem cell9
Posterior foregut51
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
endocrine cell32
posterior foregut32
Hepatic endoderm4
immature adipocyte22
lymphocyte of B lineage (iPSC)111
pancreatic PP cell3
osteoblast11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
cardiac fibroblast1
endothelial cell1
hematopoietic multipotent progenitor cell1
intermediate cardiomyocytes1
intermediate endothelial cell1
intermediate smooth muscle cell1
islet precursor cell1
mesodermal cell (lineage marker-negative)1
mesodermal cell (pacemaker intermediate)1
neuron cell of Hypothalamus (neuron)1
smooth muscle cell1
stem cell1
white fat cell1
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