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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
155
DNA binding
138
Transcription
42
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
45
broad histone mark
45
transcription factor
40
narrow histone mark
24
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
42
August, 2021
26
February, 2021
22
December, 2017
17
February, 2018
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
247
bam
229
bigWig
131
tsv
102
bed narrowPeak
97
fastq
40
tagAlign
16
bigBed narrowPeak
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
350
Homo sapiens
Biosample type
2720
tissue
1040
primary cell
549
cell line
350
in vitro differentiated cells
8
stem cell
Organ
96
connective tissue
21
epithelium
15
liver
11
embryo
3
pancreas
1
adipose tissue
1
heart
Project
350
AMP
Genome assembly (visualization)
263
hg19
231
GRCh38
4
hg18
Lab
296
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
files.read_length!
36
BIOSAMPLE
ASSAY
350 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
8
1
cardiomyocytes
3
59
embryonic stem cell
37
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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