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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 155ChIP-seq
  • 136total RNA-seq
  • 42ATAC-seq
  • 5pCHi-C
  • 4GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
Assay category
  • 155DNA binding
  • 138Transcription
  • 42DNA accessibility
  • 43D chromatin structure
Target of assay
  • 86histone
  • 86histone modification
  • 45broad histone mark
  • 45transcription factor
  • 40narrow histone mark
  • 24control
  • 11RNA binding protein
  • 3chromatin remodeller
Date released
  • 132May, 2021
  • 67August, 2017
  • 42August, 2021
  • 26February, 2021
  • 22December, 2017
  • 17February, 2018
  • 16February, 2023
  • 8March, 2020
  • 8October, 2019
  • 5November, 2019
  • 4January, 2018
  • 2December, 2019
  • 1August, 2018
Available data
  • 247bam
  • 229bigWig
  • 131tsv
  • 102bed narrowPeak
  • 97fastq
  • 40tagAlign
  • 16bigBed narrowPeak
  • 13bed bed3+
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
Organism
  • 350Homo sapiens
Biosample type
  • 2720tissue
  • 1040primary cell
  • 549cell line
  • 350in vitro differentiated cells
  • 8stem cell
Organ
  • 96connective tissue
  • 21epithelium
  • 15liver
  • 11embryo
  • 3pancreas
  • 1adipose tissue
  • 1heart
Project
  • 350AMP
Genome assembly (visualization)
  • 263hg19
  • 231GRCh38
  • 4hg18
Lab
  • 296AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 112inconsistent ontology term
  • 2audit script error
Audit category:
  • 5missing controlled_by
Audit category:
  • 12inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

350 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte67581
cardiomyocytes359
embryonic stem cell37761
neural progenitor cell21710
cardiac precursors (cardiac muscle cell)1911
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