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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
194
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
110
histone
110
histone modification
55
broad histone mark
54
narrow histone mark
47
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
66
August, 2017
43
December, 2017
42
August, 2021
37
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
287
bam
255
bigWig
137
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
390
Homo sapiens
Biosample type
2777
tissue
1088
primary cell
615
cell line
390
in vitro differentiated cells
10
stem cell
Organ
95
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
390
AMP
Genome assembly (visualization)
293
hg19
261
GRCh38
4
hg18
Lab
336
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
files.read_length!
40
BIOSAMPLE
ASSAY
390 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
65
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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