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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
184
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
108
histone
108
histone modification
55
narrow histone mark
52
broad histone mark
41
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
65
August, 2017
42
August, 2021
39
February, 2018
32
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
1
August, 2018
Available data
277
bam
243
bigWig
131
tsv
123
fastq
120
bed narrowPeak
40
tagAlign
18
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
376
Homo sapiens
Biosample type
2720
tissue
1024
primary cell
598
cell line
376
in vitro differentiated cells
7
stem cell
Organ
94
connective tissue
23
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
376
AMP
Genome assembly (visualization)
285
hg19
253
GRCh38
Lab
322
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
6
inconsistent control read length
files.read_length!
50
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
64
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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