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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 184ChIP-seq
  • 136total RNA-seq
  • 42ATAC-seq
  • 5pCHi-C
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 184DNA binding
  • 138Transcription
  • 43DNA accessibility
  • 43D chromatin structure
Target of assay
  • 108histone
  • 108histone modification
  • 55narrow histone mark
  • 52broad histone mark
  • 41transcription factor
  • 35control
  • 11RNA binding protein
  • 3chromatin remodeller
Date released
  • 132May, 2021
  • 65August, 2017
  • 42August, 2021
  • 39February, 2018
  • 32December, 2017
  • 26February, 2021
  • 16February, 2023
  • 8March, 2020
  • 8October, 2019
  • 5November, 2019
  • 2December, 2019
  • 1August, 2018
Available data
  • 277bam
  • 243bigWig
  • 131tsv
  • 123fastq
  • 120bed narrowPeak
  • 40tagAlign
  • 18bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 376Homo sapiens
Biosample type
  • 2720tissue
  • 1024primary cell
  • 598cell line
  • 376in vitro differentiated cells
  • 7stem cell
Organ
  • 94connective tissue
  • 23embryo
  • 23epithelium
  • 15liver
  • 3pancreas
  • 1adipose tissue
  • 1heart
Project
  • 376AMP
Genome assembly (visualization)
  • 285hg19
  • 253GRCh38
Lab
  • 322AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 114inconsistent ontology term
  • 2audit script error
Audit category:
  • 6missing controlled_by
Audit category:
  • 6inconsistent control read length
files.read_length!
  • 50
BIOSAMPLE
ASSAY

376 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte645811
cardiomyocytes359
embryonic stem cell40761
neural progenitor cell21710
cardiac precursors (cardiac muscle cell)1911
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