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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
152
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
76
histone
76
histone modification
41
transcription factor
38
narrow histone mark
37
broad histone mark
35
control
5
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
42
August, 2021
39
February, 2018
37
August, 2017
28
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
245
bam
215
bigWig
131
tsv
95
fastq
88
bed narrowPeak
40
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
348
Homo sapiens
Biosample type
2729
tissue
1076
primary cell
564
cell line
348
in vitro differentiated cells
10
stem cell
Organ
66
connective tissue
29
embryo
9
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
348
AMP
Genome assembly (visualization)
253
hg19
221
GRCh38
4
hg18
Lab
294
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.read_length!
76
BIOSAMPLE
ASSAY
348 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
adipocyte
36
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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