Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 43ChIP-seq
  • 1DNase-seq
Assay category
  • 43DNA binding
  • 1DNA accessibility
Target of assay
  • 26histone
  • 26histone modification
  • 15narrow histone mark
  • 13control
  • 11broad histone mark
  • 4transcription factor
Date released
  • 22February, 2018
  • 21December, 2017
  • 1August, 2017
Available data
  • 44bam
  • 44fastq
  • 30bed narrowPeak
  • 30bigWig
  • 12bed bed3+
  • 1bed broadPeak
  • 1bigBed broadPeak
  • 1bigBed narrowPeak
Organism
  • 44Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • 48primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 18embryo
  • 3epithelium
  • 1connective tissue
Project
  • 44AMP
Genome assembly (visualization)
  • 34GRCh38
  • 34hg19
Lab
  • 44AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

44 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego