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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
42
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
198
DNA binding
138
Transcription
42
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
Available data
290
bam
258
bigWig
139
fastq
131
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
392
Homo sapiens
Biosample type
2575
tissue
807
primary cell
558
cell line
392
in vitro differentiated cells
10
stem cell
Organ
95
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
392
AMP
Genome assembly (visualization)
296
hg19
264
GRCh38
4
hg18
Lab
338
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
392 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
8
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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