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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
78
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
123
Transcription
78
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
47
histone
47
histone modification
25
broad histone mark
22
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
132
May, 2021
42
August, 2021
26
February, 2021
16
February, 2023
15
August, 2017
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
1
August, 2018
Available data
156
bam
143
bigWig
116
tsv
40
bed narrowPeak
40
tagAlign
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
fastq
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
255
Homo sapiens
Biosample type
2602
tissue
804
primary cell
338
cell line
255
in vitro differentiated cells
6
stem cell
Organ
44
connective tissue
5
epithelium
3
pancreas
2
embryo
1
adipose tissue
1
heart
Project
255
AMP
Genome assembly (visualization)
180
hg19
148
GRCh38
Lab
201
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
files.run_type!
single-ended
BIOSAMPLE
ASSAY
255 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
6
1
neural progenitor cell
7
21
10
adipocyte
5
14
8
1
1
cardiac precursors (cardiac muscle cell)
19
1
1
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