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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
total RNA-seq
131
ChIP-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
pCHi-C
Assay category
136
Transcription
131
DNA binding
42
DNA accessibility
2
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
235
bam
209
bigWig
127
tsv
89
bed narrowPeak
87
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
hic
Organism
318
Homo sapiens
Biosample type
2152
tissue
992
primary cell
634
cell line
318
in vitro differentiated cells
6
stem cell
Organ
29
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
318
AMP
Genome assembly (visualization)
242
hg19
214
GRCh38
4
hg18
Lab
264
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
lab.title!
Mark McCarthy, Oxford
month_released!
August, 2017
March, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
318 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
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