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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
94
ChIP-seq
32
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
133
Transcription
94
DNA binding
32
DNA accessibility
4
3D chromatin structure
Target of assay
55
histone
55
histone modification
29
narrow histone mark
26
broad histone mark
24
control
15
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
85
May, 2021
August, 2017
43
December, 2017
39
February, 2018
38
August, 2021
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
August, 2018
Available data
237
bam
201
bigWig
131
tsv
86
fastq
85
bed narrowPeak
26
tagAlign
16
bed bed3+
16
bigBed narrowPeak
6
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
Organism
271
Homo sapiens
Biosample type
2085
tissue
615
cell line
448
primary cell
271
in vitro differentiated cells
8
stem cell
Organ
29
embryo
24
connective tissue
24
epithelium
15
liver
3
pancreas
1
heart
Project
271
AMP
Genome assembly (visualization)
236
hg19
216
GRCh38
4
hg18
Lab
271
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
August, 2018
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
271 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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