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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
123
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
125
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
46
transcription factor
45
broad histone mark
40
narrow histone mark
23
control
11
RNA binding protein
3
chromatin remodeller
Date released
130
May, 2021
68
August, 2017
August, 2021
30
December, 2017
26
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
226
bam
216
bigWig
118
tsv
114
fastq
93
bed narrowPeak
20
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
323
Homo sapiens
Biosample type
2468
tissue
1084
primary cell
618
cell line
323
in vitro differentiated cells
10
stem cell
Organ
93
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
323
AMP
Genome assembly (visualization)
243
hg19
214
GRCh38
3
hg18
Lab
273
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
month_released!
April, 2019
August, 2021
organ_slims!
embryo
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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