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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
136
total RNA-seq
42
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
195
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
chromatin remodeller
Date released
132
May, 2021
66
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
December, 2019
August, 2018
Available data
288
bam
256
bigWig
137
fastq
129
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
388
Homo sapiens
Biosample type
2695
tissue
1048
primary cell
632
cell line
388
in vitro differentiated cells
10
stem cell
Organ
94
connective tissue
29
embryo
23
epithelium
14
liver
3
pancreas
1
heart
Project
388
AMP
Genome assembly (visualization)
294
hg19
262
GRCh38
4
hg18
Lab
334
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
month_released!
August, 2018
December, 2019
July, 2019
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
388 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
65
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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