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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
102
total RNA-seq
15
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
110
DNA binding
104
Transcription
15
DNA accessibility
4
3D chromatin structure
Target of assay
61
histone
61
histone modification
32
narrow histone mark
29
broad histone mark
27
transcription factor
22
control
7
RNA binding protein
1
chromatin remodeller
Date released
131
May, 2021
43
December, 2017
39
February, 2018
August, 2021
February, 2021
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
December, 2019
Available data
177
bam
164
bigWig
101
tsv
86
fastq
64
bed narrowPeak
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
6
tagAlign
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
241
Homo sapiens
Biosample type
1896
tissue
1000
primary cell
522
cell line
241
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
241
AMP
Genome assembly (visualization)
177
hg19
163
GRCh38
4
hg18
Lab
191
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2021
February, 2021
organ_slims!
connective tissue
ovary
BIOSAMPLE
ASSAY
241 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
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