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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
131
total RNA-seq
30
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
133
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
131
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
Available data
290
bam
255
bigWig
140
fastq
130
bed narrowPeak
130
tsv
40
tagAlign
21
bed bed3+
17
bigBed narrowPeak
6
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
376
Homo sapiens
Biosample type
1829
tissue
956
primary cell
590
cell line
376
in vitro differentiated cells
10
stem cell
Organ
84
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
adipose tissue
heart
Project
376
AMP
Genome assembly (visualization)
284
hg19
264
GRCh38
4
hg18
Lab
325
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
February, 2023
organ_slims!
adipose tissue
blood vessel
heart
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
4
7
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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