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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
64
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
31
August, 2017
28
August, 2021
26
February, 2021
23
February, 2018
19
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
128
bam
93
bigWig
76
fastq
52
tsv
50
bed narrowPeak
17
bed bed3+
9
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
171
Homo sapiens
Biosample type
2110
tissue
763
primary cell
515
cell line
171
in vitro differentiated cells
8
stem cell
Organ
59
connective tissue
15
embryo
5
epithelium
3
liver
1
adipose tissue
Project
171
AMP
Genome assembly (visualization)
132
hg19
104
GRCh38
4
hg18
Lab
164
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
45
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
month_released!
May, 2021
target.investigated_as!
histone
recombinant protein
target.investigated_as!!
recombinant protein
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
30
5
8
1
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
8
4
1
cardiomyocytes (cardiac muscle cell)
2
1
2
2
2
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