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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 155ChIP-seq
  • 52total RNA-seq
  • 37ATAC-seq
  • 5pCHi-C
  • 4GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 155DNA binding
  • 54Transcription
  • 38DNA accessibility
  • 43D chromatin structure
Target of assay
  • 91histone
  • 91histone modification
  • 46broad histone mark
  • 44narrow histone mark
  • 33transcription factor
  • 31control
  • 6RNA binding protein
  • 3chromatin remodeller
Date released
  • May, 2021
  • 68August, 2017
  • 43December, 2017
  • 42August, 2021
  • 39February, 2018
  • 26February, 2021
  • 16February, 2023
  • 8March, 2020
  • 8October, 2019
  • 5November, 2019
  • 4January, 2018
  • 2December, 2019
  • 1August, 2018
Available data
  • 206bam
  • 170bigWig
  • 141fastq
  • 127bed narrowPeak
  • 52tsv
  • 34tagAlign
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 262Homo sapiens
Biosample type
  • 2738tissue
  • 882primary cell
  • 641cell line
  • 262in vitro differentiated cells
  • 10stem cell
Organ
  • 96connective tissue
  • 27embryo
  • 19epithelium
  • 15liver
  • 1adipose tissue
Project
  • 262AMP
Genome assembly (visualization)
  • 208hg19
  • 181GRCh38
  • 4hg18
Lab
  • 255AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 47inconsistent ontology term
  • 2audit script error
Audit category:
  • 6missing controlled_by
Audit category:
  • 17inconsistent control read length
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

262 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte675811
neural progenitor cell21710
pancreatic endoderm1841
cardiac precursors (cardiac muscle cell)1911
hepatocyte15
definitive endodermal cell821
primitive gut cell821
cardiomyocytes (cardiac muscle cell)21222
embryonic stem cell3211
Posterior foregut51
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
endocrine cell32
posterior foregut32
Hepatic endoderm4
immature adipocyte22
lymphocyte of B lineage (iPSC)111
osteoblast11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
islet precursor cell1
neuron cell of Hypothalamus (neuron)1
white fat cell1
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