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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
134
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
183
DNA binding
136
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
28
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
272
bam
241
bigWig
129
tsv
126
fastq
116
bed narrowPeak
40
tagAlign
25
bed bed3+
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
371
Homo sapiens
Biosample type
2154
tissue
907
primary cell
371
in vitro differentiated cells
231
cell line
10
stem cell
Organ
95
connective tissue
29
embryo
24
epithelium
liver
3
pancreas
1
adipose tissue
1
heart
Project
371
AMP
Genome assembly (visualization)
275
hg19
247
GRCh38
4
hg18
Lab
317
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2022
October, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
371 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
6
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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