Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
125
total RNA-seq
23
ATAC-seq
4
GRO-seq
4
pCHi-C
2
Hi-C
2
single cell RNA-seq
Assay category
128
DNA binding
127
Transcription
23
DNA accessibility
2
3D chromatin structure
Target of assay
74
histone
74
histone modification
38
narrow histone mark
36
broad histone mark
28
control
26
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
128
May, 2021
43
December, 2017
39
February, 2018
38
August, 2021
18
February, 2021
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
December, 2019
Available data
225
bam
198
bigWig
124
tsv
86
fastq
83
bed narrowPeak
23
tagAlign
14
bigBed narrowPeak
12
bed bed3+
4
bedpe bed3+
3
bed bedgraph
3
txt
2
hic
2
ibed
Organism
288
Homo sapiens
Biosample type
1488
tissue
673
primary cell
555
cell line
288
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
288
AMP
Genome assembly (visualization)
216
hg19
205
GRCh38
4
hg18
Lab
238
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
October, 2019
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
288 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
Hi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
18
+ See 23 more…
See all biosamples
Download